Not all applications on the iPhone in iTunes

In iTunes, I click on the iPhone icon. The left-hand columns shows the summary setting selections, Apps, music, etc... I click on applications. It shows all of the home screens OK on the right. At the top right, it shows I have 156 apps, that's right. The column 'middle' under 'Apps' with sorting options and to remove, install, etc. shows that nine apps, use any method of sorting. Some of these nine have been removed and I no longer use. It seems that something is out of sync or needs to be reset. How can I get it to show correctly?

New "App thinning" with iOS9: to make smaller applications, they are been customized for specific hardware when you download Apple directly on a device with iOS9. Applications downloaded directly to an Apple device may no longer work on any other type of device. Apple has decided there is no point of synchronization to a computer, because each device should ideally get a customized version directly from Apple. If you want a backup copy on your computer you can transfer a version non-diluted directly from the computer store that has you need may be transferred to any device-i (but will take more space). = The number on your computer may not match the count on your device, unless you download them separately to your computer.

Here is the technical description: https://developer.apple.com/library/watchos/documentation/IDEs/Conceptual/AppDis tributionGuide/AppThinning/AppThinning.html - iOS9 App thinning > ' to decide is the process to create and deliver app for devices target different package variants.» A variant contains only the executable architecture and the resources that are required for the target device. »... "The App Store will create and deliver different variants based on the features of your app supports."

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