Some iPhone apps don't transfer after restoration at the new iPhone SE

I got my iPhone SE today and made a backup of my 5s iPhone and when I restored the new SE from iTunes a lot of my applications didn't transfer via. Another strange thing is that a few apps is not found in the app store now even if I used them on my 5s.

Some of the applications are for labour (US Army) in order to get them back would be great.

iTunes does not transfer apps from your iPhone to your computer as a result of the thinning of the app. This feature, introduced with iOS 9, allows an application to take less space on your phone by downloading only what is needed for a specific model and not the entire application. To restore a new backup of the old phone, you need to have downloaded them to iTunes on your computer or on your new phone already if you want on your new phone. Unfortunately, applications that can be found is no longer on the app store is no longer available.

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