VI alertlog - tmp file too large

Hello

When I try to take a look at alertlog.
It says tmp file too big.

is it something to do with the space/tmp?
How can I see content, its about 3G now
If split can be manipulated, can provide you eg.

Thank you.

jdba wrote:
Hello

When I try to take a look at alertlog.
It says tmp file too big.

is it something to do with the space/tmp?
How can I see content, its about 3G now
If split can be manipulated, can provide you eg.

Thank you.

you only care about the most recent events then do as below

tail-500 alert_SID.log > capture.log

Tags: Database

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                        <xs:element name="drug" type="xs:integer"/>
                        <xs:element name="description" type="xs:string"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <xs:element name="drug-interactions" xdb:defaultTable="DRUG_INTERACTIONS">
              <xs:complexType>
                   <xs:sequence maxOccurs="unbounded" minOccurs="0">
                        <xs:element ref="drug-interaction"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug drug interactions definition ends -->
         <!-- Drug protein sequences (biotech) definition begins -->
         <xs:element name="protein-sequences" xdb:defaultTable="PROTEIN_SEQUENCES">
              <xs:complexType>
                   <xs:sequence maxOccurs="unbounded" minOccurs="0">
                        <xs:element name="protein-sequence" type="SequenceType"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug protein sequences (biotech) definition ends-->
         <!-- Drug external links definition begins -->
         <xs:element name="external-link">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="resource" type="xs:string"/>
                        <xs:element name="url" type="xs:string"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <xs:element name="external-links" xdb:defaultTable="EXTERNAL_LINKS">
              <xs:complexType>
                   <xs:sequence maxOccurs="unbounded" minOccurs="0">
                        <xs:element ref="external-link"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug external links definition ends -->
         <!-- Drug targets definition begins -->
         <xs:element name="targets" xdb:defaultTable="TARGETS">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="target" type="TargetBondType" minOccurs="0" maxOccurs="unbounded"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug targets definition ends -->
         <!-- Drug enzymes definition begins -->
         <xs:element name="enzymes" xdb:defaultTable="ENZYMES">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="enzyme" type="BondType" minOccurs="0" maxOccurs="unbounded"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug enzmes definition ends -->
         <!-- Drug transporters definition begins -->
         <xs:element name="transporters" xdb:defaultTable="TRANSPORTERS">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="transporter" type="BondType" minOccurs="0" maxOccurs="unbounded"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug transporters definition ends -->
         <!-- Drug carriers definition begins -->
         <xs:element name="carriers" xdb:defaultTable="CARRIERS">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="carrier" type="BondType" minOccurs="0" maxOccurs="unbounded"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Drug carriers definition ends -->
         <!-- Partner  Pfams definition begins -->
         <xs:element name="pfam">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="identifier" type="xs:string"/>
                        <xs:element name="name" type="xs:string"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <xs:element name="pfams" xdb:defaultTable="PFAMS">
              <xs:complexType>
                   <xs:sequence minOccurs="0" maxOccurs="unbounded">
                        <xs:element ref="pfam"/>
                   </xs:sequence>
              </xs:complexType>
         </xs:element>
         <!-- Partner  Pfams definition end -->
         <!-- Partner  GO Classification definition begins -->
         <xs:element name="go-classifier">
              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="category" type="xs:string"/>
                        <xs:element name="description" type="xs:string"/>
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              </xs:complexType>
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         <xs:element name="go-classifiers" xdb:defaultTable="GO_CLASSIFIERS">
              <xs:complexType>
                   <xs:sequence minOccurs="0" maxOccurs="unbounded">
                        <xs:element ref="go-classifier"/>
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         <!-- Partner Essentiality definition begins -->
         <xs:element name="essentiality">
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                   <xs:restriction base="xs:string">
                        <xs:enumeration value="Essential"/>
                        <xs:enumeration value="Non-Essential"/>
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         </xs:element>
         <!-- Partner Essentiality definition ends -->
         
         <!-- Complex Type Definitions -->
         <xs:complexType name="SequenceType">
              <xs:sequence>
                   <xs:element name="header" type="xs:string"/>
                   <xs:element name="chain" type="xs:string"/>
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         </xs:complexType>
         <xs:complexType name="PropertyType">
              <xs:sequence>
                   <xs:element name="kind">
                        <xs:simpleType>
                             <xs:restriction base="xs:string">
                                  <xs:enumeration value="logP"/>
                                  <xs:enumeration value="logS"/>
                                  <xs:enumeration value="logP/hydrophobicity"/>
                                  <xs:enumeration value="Water Solubility"/>
                                  <xs:enumeration value="caco2 Permeability"/>
                                  <xs:enumeration value="pKa"/>
                                  <xs:enumeration value="IUPAC Name"/>
                                  <xs:enumeration value="Molecular Weight"/>
                                  <xs:enumeration value="Monoisotopic Weight"/>
                                  <xs:enumeration value="SMILES"/>
                                  <xs:enumeration value="Molecular Formula"/>
                                  <xs:enumeration value="InChI"/>
                                  <xs:enumeration value="InChIKey"/>
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                   <xs:element name="value" type="xs:string"/>
                   <xs:element name="source">
                        <xs:simpleType>
                             <xs:restriction base="xs:string">
                                  <xs:enumeration value="JChem"/>
                                  <xs:enumeration value="ALOGPS"/>
                                  <xs:enumeration value=""/>
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                   </xs:element>
              </xs:sequence>
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         <xs:complexType name="PropertiesType">
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                   <xs:element name="property" type="PropertyType" minOccurs="0" maxOccurs="unbounded"/>
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         <xs:complexType name="SynonymsType">
              <xs:sequence maxOccurs="unbounded" minOccurs="0">
                   <xs:element name="synonym" type="xs:string"/>
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         </xs:complexType>
         <xs:complexType name="IdentifiersType">
              <xs:sequence maxOccurs="unbounded" minOccurs="0">
                   <xs:element name="external-identifier">
                        <xs:complexType>
                             <xs:sequence>
                                  <xs:element name="resource" type="xs:string"/>
                                  <xs:element name="identifier" type="xs:string"/>
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                        </xs:complexType>
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              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="BondActionsType">
              <xs:sequence maxOccurs="unbounded" minOccurs="0">
                   <xs:element name="action" type="xs:string"/>
              </xs:sequence>
         </xs:complexType>
         <xs:complexType name="BondType">
              <xs:sequence>
                   <xs:element name="actions" type="BondActionsType"/>
                   <xs:element name="references" type="xs:string"/>
              </xs:sequence>
              <xs:attribute name="position" type="xs:integer" use="optional"/>
              <xs:attribute name="partner" type="xs:integer"/>
         </xs:complexType>
         <xs:complexType name="TargetBondType">
              <xs:complexContent>
                   <xs:extension base="BondType">
                        <xs:sequence>
                             <xs:element name="known-action">
                                  <xs:simpleType>
                                       <xs:restriction base="xs:string">
                                            <xs:enumeration value="yes"/>
                                            <xs:enumeration value="no"/>
                                            <xs:enumeration value="unknown"/>
                                       </xs:restriction>
                                  </xs:simpleType>
                             </xs:element>
                        </xs:sequence>
                   </xs:extension>
              </xs:complexContent>
         </xs:complexType>
         
         <xs:complexType name="PartnerType">
              <xs:sequence>
                   <xs:element name="name" type="xs:string"/>
                   <xs:element name="general-function" type="xs:string"/>
                   <xs:element name="specific-function" type="xs:string"/>
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                   <xs:element name="locus" type="xs:string"/>
                   <xs:element name="reaction" type="xs:string"/>
                   <xs:element name="signals" type="xs:string"/>
                   <xs:element name="cellular-location" type="xs:string"/>
                   <xs:element name="transmembrane-regions" type="xs:string"/>
                   <xs:element name="theoretical-pi" type="DecimalOrEmptyType"/>
                   <xs:element name="molecular-weight" type="DecimalOrEmptyType"/>
                   <xs:element name="chromosome" type="xs:string"/>
                   <xs:element ref="essentiality"/>
                   <xs:element name="references" type="xs:string"/>
                   <xs:element name="external-identifiers" type="IdentifiersType"/>
                   <xs:element name="synonyms" type="SynonymsType"/>
                   <xs:element name="protein-sequence" type="SequenceType" minOccurs="0"/>
                   <xs:element name="gene-sequence" type="SequenceType" minOccurs="0"/>
                   <xs:element ref="pfams"/>
                   <xs:element ref="go-classifiers"/>
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              <xs:attribute name="id" type="xs:integer" use="required"/>
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         <xs:complexType name="DrugType">
              <xs:sequence>
                   <xs:element name="drugbank-id" type="xs:string"/>
                   <xs:element name="name" type="xs:string"/>
                   <xs:element name="description" type="xs:string"/>
                   <xs:element name="cas-number" type="xs:string"/>
                   <xs:element name="general-references" type="xs:string"/>
                   <xs:element name="synthesis-reference" type="xs:string"/>
                   <xs:element name="indication" type="xs:string"/>
                   <xs:element name="pharmacology" type="xs:string"/>
                   <xs:element name="mechanism-of-action" type="xs:string"/>
                   <xs:element name="toxicity" type="xs:string"/>
                   <xs:element name="biotransformation" type="xs:string"/>
                   <xs:element name="absorption" type="xs:string"/>
                   <xs:element name="half-life" type="xs:string"/>
                   <xs:element name="protein-binding" type="xs:string"/>
                   <xs:element name="route-of-elimination" type="xs:string"/>
                   <xs:element name="volume-of-distribution" type="xs:string"/>
                   <xs:element name="clearance" type="xs:string"/>
                   <xs:element ref="secondary-accession-numbers"/>
                   <xs:element ref="groups"/>
                   <xs:element ref="taxonomy"/>
                   <xs:element name="synonyms" type="SynonymsType"/>
                   <xs:element ref="brands"/>
                   <xs:element ref="mixtures"/>
                   <xs:element ref="packagers"/>
                   <xs:element ref="manufacturers"/>
                   <xs:element ref="prices"/>
                   <xs:element ref="categories"/>
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                   <xs:element ref="ahfs-codes"/>
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                   <xs:element name="calculated-properties" type="PropertiesType" minOccurs="0"/><!-- Only present for small molecule drugs -->
                   <xs:element name="experimental-properties" type="PropertiesType"/>
                   <xs:element name="external-identifiers" type="IdentifiersType"/>
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                   <xs:element ref="transporters"/>
                   <xs:element ref="carriers"/>
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              <xs:attribute name="type" use="required">
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                             <xs:enumeration value="small molecule"/>
                             <xs:enumeration value="biotech"/>
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                   </xs:simpleType>
              </xs:attribute>
              <xs:attribute name="updated" type="xs:string" use="required"/>
              <xs:attribute name="created" type="xs:string" use="required"/>
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              <xs:complexType>
                   <xs:sequence>
                        <xs:element name="drug" type="DrugType" minOccurs="0" maxOccurs="unbounded" />
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                                  <xs:sequence>
                                       <xs:element name="partner" type="PartnerType" minOccurs="0" maxOccurs="unbounded" />
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                             </xs:complexType>
                        </xs:element>
                   </xs:sequence>
              </xs:complexType>
         
              <xs:keyref name="targetPartnerIdKeyRef" refer="partnerIdKey">
                   <xs:selector xpath="drug/targets/*"/>
                   <xs:field xpath="@partner"/>
              </xs:keyref>
              <xs:keyref name="enzymePartnerIdKeyRef" refer="partnerIdKey">
                   <xs:selector xpath="drug/enzymes/*"/>
                   <xs:field xpath="@partner"/>
              </xs:keyref>
              <xs:keyref name="transporterPartnerIdKeyRef" refer="partnerIdKey">
                   <xs:selector xpath="drug/transporters/*"/>
                   <xs:field xpath="@partner"/>
              </xs:keyref>
              <xs:keyref name="carrierPartnerIdKeyRef" refer="partnerIdKey">
                   <xs:selector xpath="drug/carriers/*"/>
                   <xs:field xpath="@partner"/>
              </xs:keyref>
              <xs:key name="partnerIdKey">
                   <xs:selector xpath=".//partner"/>
                   <xs:field xpath="@id"/>
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    Optimization white paper request
    http://www.Oracle.com/technetwork/database/features/xmldb/xmlqueryoptimize11gr2-168036.PDF

    Well Yes... You need not put GENTABLES-online TRUE when recording object relational. There are no structures in XML schema that require tables on online storage...

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      2    V_XMLSCHEMA XMLTYPE := xmltype(bfilename('&USERNAME', 'drugbank.xsd'),nls_charset_id('AL32UTF8'));
      3  BEGIN
      4          DBMS_XMLSCHEMA_ANNOTATE.disableDefaultTableCreation(V_XMLSCHEMA);
      5          DBMS_XMLSCHEMA_ANNOTATE.disableMaintainDOM(V_XMLSCHEMA);
      6          DBMS_XMLSCHEMA_ANNOTATE.setSQLType(V_XMLSCHEMA,DBMS_XDB_CONSTANTS.XSD_COMPLEX_TYPE,'BondType',DBMS_XDB_CONSTANTS.XSD_ELEMENT,'references','CLOB',TRUE);
      7          DBMS_XMLSCHEMA_ANNOTATE.setSQLType(V_XMLSCHEMA,DBMS_XDB_CONSTANTS.XSD_COMPLEX_TYPE,'PartnerType',DBMS_XDB_CONSTANTS.XSD_ELEMENT,'references','CLOB',TRUE);
      8          DBMS_XMLSCHEMA_ANNOTATE.setSQLType(V_XMLSCHEMA,DBMS_XDB_CONSTANTS.XSD_COMPLEX_TYPE,'DrugType',DBMS_XDB_CONSTANTS.XSD_ELEMENT,'general-references','CLOB',TRUE);
      9          DBMS_XMLSCHEMA_ANNOTATE.setSQLType(V_XMLSCHEMA,DBMS_XDB_CONSTANTS.XSD_COMPLEX_TYPE,'SequenceType',DBMS_XDB_CONSTANTS.XSD_ELEMENT,'chain','CLOB',TRUE);
     10    DBMS_XMLSCHEMA.registerSchema(
     11        SCHEMAURL => :SCHEMAURL,
     12        SCHEMADOC => V_XMLSCHEMA,
     13        LOCAL     => TRUE,
     14        GENTYPES  => TRUE,
     15        GENTABLES => TRUE);
     16  END;
     17  /
    old   2:   V_XMLSCHEMA XMLTYPE := xmltype(bfilename('&USERNAME', 'drugbank.xsd'),nls_charset_id('AL32UTF8'));
    new   2:   V_XMLSCHEMA XMLTYPE := xmltype(bfilename('PHARMA', 'drugbank.xsd'),nls_charset_id('AL32UTF8'));
    
    PL/SQL procedure successfully completed.
    
    Elapsed: 00:00:01.65
    SQL> CREATE TABLE drugs_xmltype OF XMLTYPE
      2  XMLSCHEMA "http://lims.drugbank.ca/docs/drugbank.xsd"
      3  ELEMENT "drugs"
      4  /
    
    Table created.
    

    results in

    SQL*Plus: Release 11.2.0.3.0 Production on Fri Apr 29 16:14:00 2011
    
    Copyright (c) 1982, 2011, Oracle.  All rights reserved.
    
    Connected to:
    Oracle Database 11g Enterprise Edition Release 11.2.0.3.0 - 64bit Production
    With the Partitioning, OLAP, Data Mining and Real Application Testing options
    
    SQL> select table_name from user_xml_tables;
    
    TABLE_NAME
    ------------------------------
    DRUGS_XMLTYPE
    
    SQL> select count(*) from user_nested_tables;
    
      COUNT(*)
    ----------
            36
    
    SQL>
    
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