collections of iBooks, gone after update?

In the recent update to iOS 9.3 on my iPad, it eliminated all dozen or collections so I created - so my almost 1500 books are now only pell-mell in the default collections.  Is there a any way I can back these collections? Is it a question of settings by any chance?

I had the same problem but with my mac pro. I updated to the new 10.11.4 and decided also to store my books in the cloud and my books have disappeared. Slowly, they came back, but right now, all the books (including the number of 1500) epub cover art are generic iCloud covers. I had spent so much time for my book collection organized and with all appropriate illustrations and once more iBooks disappoints.

Tags: iBooks

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